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		ResearchOur research
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Research
Researchers

IRCM Researchers
Creating new

knowledgeExploring new avenues to develop tomorrow’s medical knowledge through an approach that integrates basic and clinical research
Our research units are led by principal investigators who collaborate in a spirit of collegiality and with the vision of bridging the gap between research and patients. They train the next generation of scientists and are independent and creative minds who work tirelessly to improve health.
 
Éric

LécuyerDirector, RNA Biology Research Unit
Current research
RNA BiologyThe RNA Biology Research Unit team studies the biological functions of RNA subcellular localization and how these processes are altered in disease settings.
The laboratory is affiliated with two of Canada’s top research universities: Université de Montréal (Department of Biochemistry and Molecular Medicine) and McGill University (Division of Experimental Medicine), offering a diverse and multidisciplinary training environment.
Available positions  Clinical studies 


	
			Team
		

			Alexandre MARCIL Analyste bio-informatique Bioinformatics Analyst Alexandre.Marcil@ircm.qc.ca 
Alexis Collette Stagiaire avec crédits Intern With Credits Alexis.Collette@ircm.qc.ca 
Ana NOVACIC Stagiaire postdoctoral Postdoctoral Fellow Ana.Novacic@ircm.qc.ca 
Ashley CHIN Étudiante maîtrise Master's Student Ashley.Chin@ircm.qc.ca 
Christophe Lapointe Stagiaire avec crédits Intern With Credits Christophe.Lapointe@ircm.qc.ca 
Easin SYED Étudiant au doctorat PhD Student Easin.Syed@ircm.qc.ca 
Eric Liu Stagiaire avec crédits Intern With Credits Eric.Liu@ircm.qc.ca 
Eunjeong KWON Chercheuse associée Research Associate Eunjeong.Kwon@ircm.qc.ca 
Gabrielle DESCHAMPS-FRANCOEUR Analyste bio-informatique Bioinformatics Analyst Gabrielle.Deschamps-Francoeur@ircm.qc.ca 
Gregoire DE BISSCHOP Stagiaire postdoctoral Postdoctoral Fellow Gregoire.De.Bisschop@ircm.qc.ca 
Janaina Carla DA SILVA Étudiante au doctorat PhD Student janaina.carla.da.silva@ircm.qc.ca 
Jonathan BERGEMAN Chercheur associé Research Associate Jonathan.Bergeman@ircm.qc.ca 
Juan-Carlos PADILLA Étudiant au doctorat PhD Student Juan-Carlos.Padilla@ircm.qc.ca 
Julie CARDIN Analyste bio-informatique Bioinformatics Analyst Julie.Cardin@ircm.qc.ca 
Laura Reeves Stagiaire avec crédits Intern With Credits Laura.Reeves@ircm.qc.ca 
Louis-Philip BENOIT BOUVRETTE Consultant Consultant Louis-Philip.Benoit.Bouvrette@ircm.qc.ca 
Naouel Benattallah Étudiante maitrise Master's Student naouel.benattallah@ircm.qc.ca 
Nicolas Jacques-De Vries Étudiant au doctorat Phd Student nicolas.jacques-de.vries@ircm.qc.ca 
Noe GUILLOY Étudiant au doctorat PhD Student Noe.Guilloy@ircm.qc.ca 
Samantha RUSSELL Stagiaire postdoctoral Postdoctoral Fellow Samantha.Russell@ircm.qc.ca 
Seda BARUTCU Stagiaire postdoctoral Postdoctoral Fellow Seda.Barutcu@ircm.qc.ca 
Tabasum ABDUL-RASUL Adjointe administrative Administrative Assistant Tabasum.Abdul-Rasul@ircm.qc.ca 
Thailany Gomes Monteiro Étudiante au doctorat PhD Student Thailany.Gomes.Monteiro@ircm.qc.ca 
Veneta KRASTEVA Assistante de recherche chevronnée Senior Research Assistant Veneta.Krasteva@ircm.qc.ca 
Xiu Ying MAI Assistante technique de laboratoire Lab Technical Assistant Xiu.Ying.Mai@ircm.qc.ca 

		




	
			Affiliations
		

			Director, RNA Biology Research Unit
Full IRCM Research Professor
Associate Research Professor, Department of Biochemistry and Molecular Medicine, Université de Montréal
Adjunct Professor, Department of Medicine (Division of Experimental Medicine), McGill University
Research Scholar, Fonds de recherche du Québec – Santé
Other affiliations
Member, Genetics Society of America
Member, The RNA Society

		




	
			Degrees and experience
		

			B.Sc. in biological sciences, Université du Québec à Montréal (UQAM) (1994-1997)
Doctoral studies, molecular biology program, IRCM, Université de Montréal (1997-2004)
Postdoctoral fellowship, Donnelly Centre for Cellular and Biomolecular Research, University of Toronto (2004-2009)
The Louisa Gale Scholar of the Canadian Cancer Society


		




	
			Publications
		

			Persistent mRNA localization defects and cell death in ALS neurons caused by transient cellular stress. Markmiller S, Sathe S, Server KL, Nguyen TB, Fulzele A, Cody N, Javaherian A, Broski S, Finkbeiner S, Bennett EJ, Lécuyer E, Yeo GW. Cell Rep. 2021 Sep 7;36(10):109685. doi: 10.1016/j.celrep.2021.109685. PMID: 34496257 
Translating Messages in Different Neighborhoods. Chin A, Lécuyer E. Dev Cell. 2020 Sep 28;54(6):691-693. doi: 10.1016/j.devcel.2020.09.006. PMID: 32991835 
Perspectives on ENCODE. ENCODE Project Consortium, Snyder MP, Gingeras TR, Moore JE, Weng Z, Gerstein MB, Ren B, Hardison RC, Stamatoyannopoulos JA, Graveley BR, Feingold EA, Pazin MJ, Pagan M, Gilchrist DA, Hitz BC, Cherry JM, Bernstein BE, Mendenhall EM, Zerbino DR, Frankish A, Flicek P, Myers RM. Nature. 2020 Jul;583(7818):693-698. doi: 10.1038/s41586-020-2449-8. Epub 2020 Jul 29. PMID: 32728248
A large-scale binding and functional map of human RNA-binding proteins. Van Nostrand EL, Freese P, Pratt GA, Wang X, Wei X, Xiao R, Blue SM, Chen JY, Cody NAL, Dominguez D, Olson S, Sundararaman B, Zhan L, Bazile C, Bouvrette LPB, Bergalet J, Duff MO, Garcia KE, Gelboin-Burkhart C, Hochman M, Lambert NJ, Li H, McGurk MP, Nguyen TB, Palden T, Rabano I, Sathe S, Stanton R, Su A, Wang R, Yee BA, Zhou B, Louie AL, Aigner S, Fu XD, Lécuyer E, Burge CB, Graveley BR, Yeo GW. Nature. 2020 Jul;583(7818):711-719. doi: 10.1038/s41586-020-2077-3. Epub 2020 Jul 29. PMID: 32728246 
Expanded encyclopaedias of DNA elements in the human and mouse genomes. ENCODE Project Consortium, Moore JE, Purcaro MJ, Pratt HE, Epstein CB, Shoresh N, Adrian J, Kawli T, Davis CA, Dobin A, Kaul R, Halow J, Van Nostrand EL, Freese P, Gorkin DU, Shen Y, He Y, Mackiewicz M, Pauli-Behn F, Williams BA, Mortazavi A, Keller CA, Zhang XO, Elhajjajy SI, Huey J, Dickel DE, Snetkova V, Wei X, Wang X, Rivera-Mulia JC, Rozowsky J, Zhang J, Chhetri SB, Zhang J, Victorsen A, White KP, Visel A, Yeo GW, Burge CB, Lécuyer E, Gilbert DM, Dekker J, Rinn J, Mendenhall EM, Ecker JR, Kellis M, Klein RJ, Noble WS, Kundaje A, Guigó R, Farnham PJ, Cherry JM, Myers RM, Ren B, Graveley BR, Gerstein MB, Pennacchio LA, Snyder MP, Bernstein BE, Wold B, Hardison RC, Gingeras TR, Stamatoyannopoulos JA, Weng Z. Nature. 2020 Jul;583(7818):699-710. doi: 10.1038/s41586-020-2493-4. Epub 2020 Jul 29. PMID: 32728249 
Staufen1 localizes to the mitotic spindle and controls the localization of RNA populations to the spindle. Hassine S, Bonnet-Magnaval F, Benoit Bouvrette LP, Doran B, Ghram M, Bouthillette M, Lecuyer E, DesGroseillers L. J Cell Sci. 2020 Jul 23;133(14):jcs247155. doi: 10.1242/jcs.247155. PMID: 32576666 
Inter-dependent Centrosomal Co-localization of the cen and ik2 cis-Natural Antisense mRNAs in Drosophila. Bergalet J, Patel D, Legendre F, Lapointe C, Benoit Bouvrette LP, Chin A, Blanchette M, Kwon E, Lécuyer E. Cell Rep. 2020 Mar 10;30(10):3339-3352.e6. doi: 10.1016/j.celrep.2020.02.047. PMID: 3216054
Bioinformatics Approaches to Gain Insights into cis-Regulatory Motifs Involved in mRNA Localization. Benoit Bouvrette LP, Blanchette M, Lécuyer E. Adv Exp Med Biol. 2019;1203:165-194. doi: 10.1007/978-3-030-31434-7_7. PMID: 31811635
oRNAment: a database of putative RNA binding protein target sites in the transcriptomes of model species. Benoit Bouvrette LP, Bovaird S, Blanchette M, Lécuyer E. Nucleic Acids Res. 2020 Jan 8;48(D1):D166-D173. doi: 10.1093/nar/gkz986. PMID: 31724725
A ribosomal protein S5 isoform is essential for oogenesis and interacts with distinct RNAs in Drosophila melanogaster. Kong J, Han H, Bergalet J, Bouvrette LPB, Hernández G, Moon NS, Vali H, Lécuyer É, Lasko P. Sci Rep. 2019 Sep 24;9(1):13779. doi: 10.1038/s41598-019-50357-z. PMID: 31551467
Prediction of mRNA subcellular localization using deep recurrent neural networks. 
Yan Z, Lécuyer E, Blanchette M. Bioinformatics. 2019 Jul 15;35(14):i333-i342. doi: 10.1093/bioinformatics/btz337. PMID: 31510698 
Small-Molecule Modulation of TDP-43 Recruitment to Stress Granules Prevents Persistent TDP-43 Accumulation in ALS/FTD. Fang MY, Markmiller S, Vu AQ, Javaherian A, Dowdle WE, Jolivet P, Bushway PJ, Castello NA, Baral A, Chan MY, Linsley JW, Linsley D, Mercola M, Finkbeiner S, Lecuyer E, Lewcock JW, Yeo GW. Neuron. 2019 Sep 4;103(5):802-819.e11. doi: 10.1016/j.neuron.2019.05.048. Epub 2019 Jul 1. PMID: 31272829 
Pervasive Chromatin-RNA Binding Protein Interactions Enable RNA-Based Regulation of Transcription. Xiao R, Chen JY, Liang Z, Luo D, Chen G, Lu ZJ, Chen Y, Zhou B, Li H, Du X, Yang Y, San M, Wei X, Liu W, Lécuyer E, Graveley BR, Yeo GW, Burge CB, Zhang MQ, Zhou Y, Fu XD. Cell. 2019 Jun 27;178(1):107-121.e18. doi: 10.1016/j.cell.2019.06.001. PMID: 31251911 
Van Nostrand EL, Freese P, Pratt GA, Wang X, Wei X, Xiao R, Blue SM, Dominguez D, Cody NAL, Olson S, Sundararaman B, Zhan L, Bazile C, Benoit Bouvrette LP, Bergalet J, Chen J, Duff MO, Garci KE, Gelboin-Burkhart C, Hochman A, Lambert NJ, Li H, Nguyen TB, Palden T, Rabano I, Sathe S, Stanton R, Zhou B, Su A, Wang R, Yee BA, Louie AL, Aigner S, Fu X-D, Lécuyer E, Burge CB, Graveley BR, Yeo GW. A large-scale binding and functional map of human RNA binding proteins. bioRXiv. (doi.org/10.1101/179648)
Bovaird S, Patel D, Padilla JA, Lécuyer E., Biological functions, regulatory mechanisms, and disease relevance of RNA localization pathways., FEBS Lett. 2018 Sep; 592(17):2948-2972. doi: 10.1002/1873-3468.13228. Epub. 2018 Sep 05
Lefebvre FA, Lécuyer É., Flying the RNA Nest: Drosophila Reveals Novel Insights into the Transcriptome Dynamics of Early Development, J Dev Biol. 2018 Mar 7; 6(1). pii: E5. doi: 10.3390/jdb6010005. 
Markmiller S, Soltanieh S, Server KL, Mak R, Jin W, Fang MY, Luo EC, Krach F, Yang D, Sen A, Fulzele A, Wozniak JM, Gonzalez DJ, Kankel MW, Gao FB, Bennett EJ, Lécuyer E, Yeo GW. Context-Dependent and Disease-Specific Diversity in Protein Interactions within Stress Granules. Cell. 2018 Jan 25; 172(3):590-604.e13. doi: 10.1016/j.cell.2017.12.032.
Benoit Bouvrette LP, Cody NAL, Bergalet J, Lefebvre FA, Diot C, Wang X, Blanchette M, Lécuyer E., CeFra-seq reveals broad asymmetric mRNA and noncoding RNA distribution profiles in Drosophilaand human cells., RNA. 2018 Jan; 24(1):98-113. doi: 10.1261/rna.063172.117. Epub 2017 Oct 27.
Lefebvre FA, Benoit Bouvrette LP, Bergalet J, Lécuyer E., Biochemical Fractionation of Time-Resolved Drosophila Embryos Reveals Similar Transcriptomic Alterations in Replication Checkpoint and Histone mRNA Processing Mutants., J Mol Biol. 2017 Oct 27;429(21):3264-3279. doi: 10.1016/j.jmb.2017.01.022. Epub 2017 Feb 3.
Diot C, Chin A, Lécuyer E., Optimized FISH methods for visualizing RNA localization properties in Drosophila and human tissues and cultured cells, Methods. 2017 Aug 15; 126:156-165. doi: 10.1016/j.ymeth.2017.06.027. Epub 2017 Jun 28.
Lefebvre FA, Cody NAL, Bouvrette LPB, Bergalet J, Wang X, Lécuyer E., CeFra-seq: Systematic mapping of RNA subcellular distribution properties through cell fractionation coupled to deep-sequencing., Methods. 2017 Aug 15; 126:138-148. doi: 10.1016/j.ymeth.2017.05.017. Epub 2017 Jun 2.
Chin A, Lécuyer E., RNA localization: Making its way to the center stage, Biochim Biophys Acta Gen Subj. 2017 Nov; 1861(11 Pt B):2956-2970. doi: 10.1016/j.bbagen.2017.06.011. Epub 2017 Jun 16.
Lefebvre FA, Bouvrette LPB, Bergalet J, Lécuyer E., Data for the generation of RNA spatiotemporal distributions and interpretation of Chk1 and SLBP protein depletion phenotypes during Drosophila embryogenesis., Data Brief. 2017 May 13; 13:28-31. doi: 10.1016/j.dib.2017.05.008. eCollection 2017 Aug.
Lefebvre FA, Lécuyer E., Small Luggage for a Long Journey: Transfer of Vesicle-Enclosed Small RNA in Interspecies Communication, Front Microbiol. 2017 Mar 16;8: 377. doi: 10.3389/fmicb.2017.00377. eCollection 2017. 
Kowanda M, Bergalet J, Wieczorek M, Brouhard G, Lécuyer É, Lasko P., Loss of function of the Drosophila Ninein-related centrosomal protein Bsg25D causes mitotic defects and impairs embryonic development., Biol Open. 2016 Aug 15; 5(8):1040-51. doi: 10.1242/bio.019638.
Lefebvre FA, Benoit Bouvrette LP, Perras L, Blanchet-Cohen A, Garnier D, Rak J, Lécuyer É. Comparative transcriptomic analysis of human and Drosophila extracellular vesicles, Sci Rep. 2016 Jun 10; 6:27680. doi: 10.1038/srep27680.
Sundararaman B, Zhan L, Blue SM, Stanton R, Elkins K, Olson S, Wei X, Van Nostrand EL, Pratt GA, Huelga SC, Smalec BM, Wang X, Hong EL, Davidson JM, Lécuyer E, Graveley BR, Yeo GW., Resources for the Comprehensive Discovery of Functional RNA Elements., Mol Cell. 2016 Mar 17; 61(6):903-13. doi: 10.1016/j.molcel.2016.02.012.
Iampietro C, Lécuyer E., The embryonic DNA damage response: emerging functions of messenger RNA nuclear retention. Med Sci (Paris). 2014 Dec; 30(12):1070-3. doi: 10.1051/medsci/20143012005. Epub 2014 Dec 24. French. No abstract available.
Gerby B, Tremblay CS, Tremblay M, Rojas-Sutterlin S, Herblot S, Hébert J, Sauvageau G, Lemieux S, Lécuyer E, Veiga DF, Hoang T., SCL, LMO1 and Notch1 reprogram thymocytes into self-renewing cells, PLoS Genet. 2014 Dec 18;10(12):e1004768. doi: 10.1371/journal.pgen.1004768. eCollection 2014 Dec.
Bergalet J, Lécuyer E. The functions and regulatory principles of mRNA intracellular trafficking. Adv Exp Med Biol. 2014; 825:57-96. doi: 10.1007/978-1-4939-1221-6_2. 
Rojas-Sutterlin S, Lecuyer E, Hoang T., Kit and Scl regulation of hematopoietic stem cells. Curr Opin Hematol. 2014 Jul; 21(4):256-64. doi: 10.1097/MOH.0000000000000052.
Iampietro C, Bergalet J, Wang X, Cody NA, Chin A, Lefebvre FA, Douziech M, Krause HM, Lécuyer E., Developmentally regulated elimination of damaged nuclei involves a Chk2-dependent mechanism of mRNA nuclear retention. Dev Cell. 2014 May 27; 29(4):468-81. doi: 10.1016/j.devcel.2014.03.025. Epub 2014 May 15.
Cody NA, Iampietro C, Lécuyer E., The many functions of mRNA localization during normal development and disease: from pillar to post., Wiley Interdiscip Rev Dev Biol. 2013 Nov-Dec;2(6):781-96. doi: 10.1002/wdev.113. Epub 2013 Mar 18. 
Zhang Y, Ponty Y, Blanchette M, Lécuyer E, Waldispühl J., SPARCS: a web server to analyze (un)structured regions in coding RNA sequences., Nucleic Acids Res. 2013 Jul;41(Web Server issue):W480-5. doi: 10.1093/nar/gkt461. Epub 2013 Jun 8.
Legendre F, Cody N, Iampietro C, Bergalet J, Lefebvre FA, Moquin-Beaudry G, Zhang O, Wang X, Lécuyer E., Whole mount RNA fluorescent in situ hybridization of Drosophila embryos, J Vis Exp. 2013 Jan 30;(71):e50057. doi: 10.3791/50057.


		


Studying mRNA targeting to the mitotic apparatus.

Funded by the Canadian Institutes of Health Research (CIHR)
Epithelial cell polarity regulation by localized mRNAs.

Funded by the Canadian Cancer Society Research Institute
Defining the mechanism of RNA targeting to extracellular vesicles.

Funded by the Cancer Research Society (team project with Janusz Rak and Nada Jabado)
The roles of MBNL proteins in the pathogenesis of myotonic dystrophy.

Jointly funded by Muscular Dystrophy Canada-The Rachel Fund and CIHR (team project with Pascal Chartrand and Marlene Oeffinger)
Comprehensive analysis of function RNA elements encoded in the human genome

This project is part of ongoing efforts within the ENCODE consortium (team project with Brenton Graveley, Gene Yeo, Xiang-Dong Fu and Chris Burge). Our labs main contribution involves the systematic characterization of the subcellular distribution properties of human RNA Binding Proteins.
Important Discoveries
Tools
 


	
			Press review
		

			Collaboration entre l’IVADO et Génome Québec pour financer des projets de recherche - Université de Montréal - 4 juillet 2019
Une collaboration stratégique entre IVADO et Génome Québec - Génome Québec - 20 juin 2019
AmorChem Invests in Groundbreaking RNA Technology - Financial Post - 14 janvier 2019
Des codes postaux dans nos cellules - Génome Québec - 20 novembre 2017


		




	
			Press review
		

			Deux lauréats du concours Thérapies innovantes pour les ataxies héréditaires à l’UdeM UdeM Nouvelles 18 March 2024 
Interrupteurs d’ADN sur mesure Radio-Canada Ici Première 27 October 2024 

		




	
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IRCM Researchers

Creating new knowledge

Éric Lécuyer

Current research

RNA Biology

Important Discoveries

Tools

Join the group Research

Available positions

Graduate research project - mRNA Subcellular Trafficking

Postdoctoral training - RNA Biology and Genomics

Ongoing clinical studies

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Be part of the solution

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Éric
Lécuyer

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